Project
Contributor Guides
seq_id
Reference
require_api_key()
api_health()
api_gpu_status()
api_list_methods()
api_quota()
api_submit_job()
api_job_status()
api_download_result()
api_validate()
coerce_bool_param()
canonicalise_targets()
canonical_prediction_type()
validate_prediction_parameters()
validate_sequence_handling_option()
determine_required_columns()
validate_required_columns_for_methods()
create_job_directory()
save_job_input_file()
get_experimental_results()
extract_job_parameters_from_request()
create_rate_limit_headers()
get_queue_position()
create_job_status_response_data()
coerce_recon_xkg()
is_recon_xkg_allowed()
resolve_recon_xkg()
log_recon_xkg_outcome()
build_extra_info()
validate_post_request()
validate_post_request_similarity()
extract_file_from_request()
extract_csv_file_from_request()
extract_session_id_from_request()
extract_validation_session_id()
validate_post_with_file_request()
extract_csv_file_with_validation()
process_job_submission()
process_job_submission_from_params()
handle_quota_validation()
create_job_record()
dispatch_prediction_task()
dispatch_recon_xkg_cache_task()
get_job_status_data()
api_key_status()
api_key_generate()
api_key_revoke()
serialize_result_csv()
CachedFailure
sha256_text()
canonical_unit()
params_fingerprint()
make_lookup_key()
build_unit_keys()
coerce_value()
cached_outcome_is_valid()
is_cacheable_failure_reason()
get_many()
upsert_many()
get_similarity_many()
upsert_similarity_many()
extract_protein_sequences_from_csv()
create_unique_sequence_mapping()
create_fasta_file()
create_mmseqs_database()
run_mmseqs_search()
parse_mmseqs_results()
parse_mmseqs_results_raw()
map_results_to_original_sequences()
calculate_identity_histogram()
calculate_average_similarity()
cleanup_temporary_files()
safe_convert_to_mol()
split_single_substrate_components()
validate_csv_structure()
validate_single_substrate_schema()
validate_substrate_list_schema()
validate_products_column()
validate_substrates()
validate_protein_sequence_characters()
calculate_sequence_length_violations()
validate_protein_sequences()
clean_data_for_json()
parse_csv_file()
validate_file_format()
validate_required_columns()
validate_column_emptiness()
SimilarityCacheOnlyMiss
analyze_sequence_similarity()
analyze_similarity_for_method()
similarity_cache_label_for_method()
append_kcat_similarity_columns_to_output_csv()
kcat_similarity_sequences_for_output_rows()
validate_input_file()
ExpandedSequence
SequenceExpansionPlan
TargetPredictionUnit
TargetExpansionPlan
split_sequence_list()
count_multi_sequence_rows()
reduce_sequence_predictions()
mark_about_stats_cache_stale()
refresh_about_stats_cache()
get_about_stats()
ExpandedSubstrate
SubstrateExpansionPlan
split_substrate_list()
reduce_substrate_predictions()
initialise_job_progress_stages()
SequenceBatchPlan
TargetBatchPlan
build_target_batch_plan()
start_embedding_tracking()
ReconXkgCacheSnapshot
preflight_recon_xkg_cache()
Persist per-job GPU precompute outcomes in Redis for API status reporting.